San Miguel River sub-basin
Beaver Creek
Butcher Creek
Clear Creek
Deep Creek
East Beaver Creek
Fall Creek Trib
Horsefly Creek
Mill Creek
Red Canyon
Saltado Creek
San Miguel River
Specie Creek
Tabeguache Creek
West Beaver Creek
Dolores River sub-basin
Bear Creek
Blue Creek
Dolores River
Little Dolores River
Little Taylor Creek
Mesa Creek
Middle Mancos River
North Fork Mesa Creek
Rio Lado
West Mancos River
Animas River sub-basin
Animas River
Big Bend Creek
Cascade Creek
Deer Creek
East Fork Hermosa Creek
Florida River
Hermosa Creek
South Fork Hermosa
West Virginia Gulch
San Juan River sub-basin
Augustora Creek
East Fk Piedra River Trib
East Fork Piedra River
Himes Creek
Los Pinos River
Monument Lake Trib
Navajo River
Turkey Creek